extractFeatureSet.AffymetrixCelSet

AffymetrixCelSet.extractFeatureSet

extractFeatureSet,AffymetrixCelSet-method

extractFeatureSet

AffymetrixCelSet.extractSnpFeatureSet

extractSnpFeatureSet.AffymetrixCelSet

extractSnpFeatureSet,AffymetrixCelSet-method

extractSnpFeatureSet

Extracts CEL signals an in-memory FeatureSet object from a <code>AffymetrixCelSet</code> object.
 Note that any modifications done to the extracted object will not
 be reflected in the original CEL set.

methods

internal

programming

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

extractFeatureSet.AffymetrixCelSet function

<dl> <dt>...</dt>
<dd>Additional argument passed to <code>read.celfiles</code>.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Author

Extracts CEL signals an in-memory FeatureSet object — extractFeatureSet.AffymetrixCelSet

<dl>

 <dt>...</dt>
<dd>Additional argument passed to <code>read.celfiles</code>.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Extracts CEL signals an in-memory FeatureSet object

extractFeatureSet.AffymetrixCelSet: Extracts CEL signals an in-memory FeatureSet object

Description

Usage

Value

Arguments

Author

See Also