fit.SmoothMultiarrayModel

SmoothMultiarrayModel.fit

fit,SmoothMultiarrayModel-method

Fits the model for one chromosome across samples.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

fit.SmoothMultiarrayModel function

<dl> <dt>chromosome</dt>
<dd>An <code><a href="/link/integer?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::integer">integer</a></code> specifying the index of the chromosome to
 be fitted.</dd> <dt>...</dt>
<dd>Additional arguments passed down to the internal fit function.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Author

Fits the model for one chromosome across samples — fit.SmoothMultiarrayModel

<dl>

 <dt>chromosome</dt>
<dd>An <code><a href='https://rdrr.io/r/base/integer.html'>integer</a></code> specifying the index of the chromosome to
 be fitted.</dd>

 <dt>...</dt>
<dd>Additional arguments passed down to the internal fit function.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Fits the model for one chromosome across samples

fit.SmoothMultiarrayModel: Fits the model for one chromosome across samples

Description

Usage

Arguments

Author

See Also