getAlleleCellPairs.AffymetrixCdfFile

AffymetrixCdfFile.getAlleleCellPairs

getAlleleCellPairs,AffymetrixCdfFile-method

Gets the cell indices of allele pairs
 in units of type "genotyping" with 2 or 4 unit groups.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

getAlleleCellPairs.AffymetrixCdfFile function

<dl> <dt>units</dt>
<dd>A <code><a href="/link/integer?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::integer">integer</a></code> <code><a href="/link/vector?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::vector">vector</a></code> of units to query.
 If <code><a href="/link/NULL?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::NULL">NULL</a></code>, all units are considered.</dd> <dt>stratifyBy</dt>
<dd>A <code><a href="/link/character?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::character">character</a></code> string specifying what type of probes
 to return.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>verbose</dt>
<dd>A <code><a href="/link/logical?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::logical">logical</a></code> or a <code>Verbose</code> object.</dd></dl>

Arguments

Author

Gets the cell indices of allele pairs — getAlleleCellPairs.AffymetrixCdfFile

<dl>

 <dt>units</dt>
<dd>A <code><a href='https://rdrr.io/r/base/integer.html'>integer</a></code> <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> of units to query.
 If <code><a href='https://rdrr.io/r/base/NULL.html'>NULL</a></code>, all units are considered.</dd>

 <dt>stratifyBy</dt>
<dd>A <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> string specifying what type of probes
 to return.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>verbose</dt>
<dd>A <code><a href='https://rdrr.io/r/base/logical.html'>logical</a></code> or a <code>Verbose</code> object.</dd>

</dl>

Gets the cell indices of allele pairs

getAlleleCellPairs.AffymetrixCdfFile: Gets the cell indices of allele pairs

Description

Usage

Value

Arguments

Author

See Also