getBaseline.ChipEffectSet

ChipEffectSet.getBaseline

getBaseline,ChipEffectSet-method

Gets the baseline signals across chromosomes.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

getBaseline.ChipEffectSet function

<dl> <dt>force</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, the CEL file that stores the is recreated.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd> <dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Author

Gets the baseline signals across chromosomes — getBaseline.ChipEffectSet

<dl>

 <dt>force</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, the CEL file that stores the is recreated.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

</dl>

Gets the baseline signals across chromosomes

getBaseline.ChipEffectSet: Gets the baseline signals across chromosomes

Description

Usage

Arguments

Author

See Also