getCellIndices.ExonChipEffectFile

ExonChipEffectFile.getCellIndices

getCellIndices,ExonChipEffectFile-method

Retrieves tree list of cell indices for a set of units.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

getCellIndices.ExonChipEffectFile function

<dl> <dt>...</dt>
<dd>Additional arguments passed to <code>getCellIndices()</code>
 of <code>ChipEffectFile</code>.</dd> <dt>unlist</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, the cell indices are returned as a <code><a href="/link/vector?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::vector">vector</a></code>.</dd> <dt>force</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, the cell indices are re-read regardless whether
 they are already cached in memory or not.</dd> <dt>.cache</dt>
<dd>(internal) If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, the result is cached in memory.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Author

Retrieves tree list of cell indices for a set of units — getCellIndices.ExonChipEffectFile

<dl>

 <dt>...</dt>
<dd>Additional arguments passed to <code>getCellIndices()</code>
 of <code>ChipEffectFile</code>.</dd>

 <dt>unlist</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, the cell indices are returned as a <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code>.</dd>

 <dt>force</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, the cell indices are re-read regardless whether
 they are already cached in memory or not.</dd>

 <dt>.cache</dt>
<dd>(internal) If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, the result is cached in memory.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Retrieves tree list of cell indices for a set of units

getCellIndices.ExonChipEffectFile: Retrieves tree list of cell indices for a set of units

Description

Usage

Value

Arguments

Author

See Also