getChipEffectSet.ProbeLevelModel

ProbeLevelModel.getChipEffectSet

getChipEffectSet,ProbeLevelModel-method

ProbeLevelModel.getChipEffects

getChipEffects.ProbeLevelModel

getChipEffects,ProbeLevelModel-method

Gets the set of chip effects for this model.
 There is one chip-effect file per array.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

getChipEffectSet.ProbeLevelModel function

<dl> <dt>...</dt>
<dd>Arguments passed to <code>getMonocellCdf()</code> of
 <code>AffymetrixCdfFile</code>.</dd> <dt>verbose</dt>
<dd>A <code><a href="/link/logical?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::logical">logical</a></code> or a <code>Verbose</code>.</dd></dl>

Arguments

Gets the set of chip effects for this model — getChipEffectSet.ProbeLevelModel

<dl>

 <dt>...</dt>
<dd>Arguments passed to <code>getMonocellCdf()</code> of
 <code>AffymetrixCdfFile</code>.</dd>

 <dt>verbose</dt>
<dd>A <code><a href='https://rdrr.io/r/base/logical.html'>logical</a></code> or a <code>Verbose</code>.</dd>

</dl>

Gets the set of chip effects for this model

getChipEffectSet.ProbeLevelModel: Gets the set of chip effects for this model

Description

Usage

Value

Arguments

See Also