getUnitGroupCellMap.ChipEffectFile

ChipEffectFile.getUnitGroupCellMap

getUnitGroupCellMap,ChipEffectFile-method

ChipEffectFile.getCellMap

getCellMap.ChipEffectFile

getCellMap,ChipEffectFile-method

Gets a (unit, group, cell) index map.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

getUnitGroupCellMap.ChipEffectFile function

<dl> <dt>units</dt>
<dd>The units for which the map should be returned.
 If <code><a href="/link/NULL?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::NULL">NULL</a></code>, all units are considered.</dd> <dt>force</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, cached cell indices are ignored.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Gets a (unit, group, cell) index map — getUnitGroupCellMap.ChipEffectFile

<dl>

 <dt>units</dt>
<dd>The units for which the map should be returned.
 If <code><a href='https://rdrr.io/r/base/NULL.html'>NULL</a></code>, all units are considered.</dd>

 <dt>force</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, cached cell indices are ignored.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Gets a (unit, group, cell) index map

getUnitGroupCellMap.ChipEffectFile: Gets a (unit, group, cell) index map

Description

Usage

Value

Arguments

See Also