getXAM.ChipEffectFile

ChipEffectFile.getXAM

getXAM,ChipEffectFile-method

Gets the physical position, log-intensities and log-ratios of chip effects for two arrays of units on a certain chromosome.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

getXAM.ChipEffectFile function

<dl> <dt>other</dt>
<dd>The second <code>ChipEffectFile</code> object used as the
 reference.</dd> <dt>chromosome</dt>
<dd>(The chromosome for which results should be returned.</dd> <dt>units</dt>
<dd>(The subset of units to be matched.
 If <code><a href="/link/NULL?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::NULL">NULL</a></code>, all units are considered.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Author

Gets the physical position, log-intensities and log-ratios of chip effects for two arrays — getXAM.ChipEffectFile

<dl>

 <dt>other</dt>
<dd>The second <code>ChipEffectFile</code> object used as the
 reference.</dd>

 <dt>chromosome</dt>
<dd>(The chromosome for which results should be returned.</dd>

 <dt>units</dt>
<dd>(The subset of units to be matched.
 If <code><a href='https://rdrr.io/r/base/NULL.html'>NULL</a></code>, all units are considered.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Gets the physical position, log-intensities and log-ratios of chip effects for two arrays

getXAM.ChipEffectFile: Gets the physical position, log-intensities and log-ratios of chip effects for two arrays

Description

Usage

Value

Arguments

Author

See Also