groupUnitsByDimension.AffymetrixCdfFile

AffymetrixCdfFile.groupUnitsByDimension

groupUnitsByDimension,AffymetrixCdfFile-method

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

groupUnitsByDimension.AffymetrixCdfFile function

<dl> <dt>units</dt>
<dd>An optional <code><a href="/link/integer?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::integer">integer</a></code> <code><a href="/link/vector?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::vector">vector</a></code> specifying the units to be
 queried.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>sort</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, the sets are ordered by number of groups per
 units and then by the number of cells per group.</dd> <dt>verbose</dt>
<dd>A <code><a href="/link/logical?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::logical">logical</a></code> or <code>Verbose</code>.</dd></dl>

Arguments

Author

Groups units by dimensions — groupUnitsByDimension.AffymetrixCdfFile

<dl>

 <dt>units</dt>
<dd>An optional <code><a href='https://rdrr.io/r/base/integer.html'>integer</a></code> <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> specifying the units to be
 queried.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>sort</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, the sets are ordered by number of groups per
 units and then by the number of cells per group.</dd>

 <dt>verbose</dt>
<dd>A <code><a href='https://rdrr.io/r/base/logical.html'>logical</a></code> or <code>Verbose</code>.</dd>

</dl>

Groups units by dimensions

groupUnitsByDimension.AffymetrixCdfFile: Groups units by dimensions

Description

Usage

Value

Arguments

Author

See Also