isResequenceChip.AffymetrixCdfFile

AffymetrixCdfFile.isResequenceChip

isResequenceChip,AffymetrixCdfFile-method

Static method to check if a CDF is for a resequencing (CustomSeq) chip. Note, this method is not bullet proof. Several
 resequencing CDF does not carry that information. For such, we add
 tests based on their chip type, as we become aware of them.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

isResequenceChip.AffymetrixCdfFile function

Arguments

Author

Static method to check if a CDF is for a resequencing (CustomSeq) chip — isResequenceChip.AffymetrixCdfFile

Static method to check if a CDF is for a resequencing (CustomSeq) chip

isResequenceChip.AffymetrixCdfFile: Static method to check if a CDF is for a resequencing (CustomSeq) chip

Description

Usage

Value

Arguments

Author

See Also