process.ArrayExplorer

ArrayExplorer.process

process,ArrayExplorer-method

Generates image files, scripts and dynamic pages for the explorer.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

process.ArrayExplorer function

<dl> <dt>arrays</dt>
<dd>An optional <code><a href="/link/vector?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::vector">vector</a></code> of arrays to be processed.
 If <code><a href="/link/NULL?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::NULL">NULL</a></code>, all arrays are considered.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>verbose</dt>
<dd>A <code><a href="/link/logical?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::logical">logical</a></code> or <code>Verbose</code>.</dd></dl>

Arguments

Generates image files, scripts and dynamic pages for the explorer — process.ArrayExplorer

<dl>

 <dt>arrays</dt>
<dd>An optional <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> of arrays to be processed.
 If <code><a href='https://rdrr.io/r/base/NULL.html'>NULL</a></code>, all arrays are considered.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>verbose</dt>
<dd>A <code><a href='https://rdrr.io/r/base/logical.html'>logical</a></code> or <code>Verbose</code>.</dd>

</dl>

Generates image files, scripts and dynamic pages for the explorer

process.ArrayExplorer: Generates image files, scripts and dynamic pages for the explorer

Description

Usage

Value

Arguments

See Also