setCdf.AffymetrixCelSet

AffymetrixCelSet.setCdf

setCdf,AffymetrixCelSet-method

Sets the CDF structure for this CEL set. This structures is assigned to all CEL files in the set.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

setCdf.AffymetrixCelSet function

<dl> <dt>cdf</dt>
<dd>An <code>AffymetrixCdfFile</code> object.</dd> <dt>verbose</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, progress details are printed, otherwise not.
 May also be a <code>Verbose</code> object.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>.checkArgs</dt>
<dd>(Internal) If <code><a href="/link/FALSE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::FALSE">FALSE</a></code>, arguments are not validated.</dd></dl>

Arguments

Author

Sets the CDF structure for this CEL set — setCdf.AffymetrixCelSet

<dl>

 <dt>cdf</dt>
<dd>An <code>AffymetrixCdfFile</code> object.</dd>

 <dt>verbose</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, progress details are printed, otherwise not.
 May also be a <code>Verbose</code> object.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>.checkArgs</dt>
<dd>(Internal) If <code><a href='https://rdrr.io/r/base/logical.html'>FALSE</a></code>, arguments are not validated.</dd>

</dl>

Sets the CDF structure for this CEL set

setCdf.AffymetrixCelSet: Sets the CDF structure for this CEL set

Description

Usage

Value

Arguments

Author

See Also