setRestructor.AffymetrixCdfFile

AffymetrixCdfFile.setRestructor

setRestructor,AffymetrixCdfFile-method

Specifies a function through which of all or a subset of the units.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

setRestructor.AffymetrixCdfFile function

<dl> <dt>...</dt>
<dd>Additional arguments passed to
 <code>readCdfCellIndices</code>.</dd></dl>

Arguments

The reconstructor function have to:<ol>
<li>Accept a <code><a href="/link/list?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::list">list</a></code> structure as its first argument.</li>
<li>Require no other arguments.</li>
<li>Return a <code><a href="/link/list?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::list">list</a></code> structure of identical length as the input one.
 In other words, it must not change the number of units nor
 the order of units.</li>
</ol>The reconstructor function may:<ol>
<li>Rearrange the groups or change the number of groups, for
 instance by utilizing <code>applyCdfGroups</code>.</li>
<li>Exclude some cells, for instance by excluding MMs.</li>
</ol>

Requirements

Specifies a function through which — setRestructor.AffymetrixCdfFile

<dl>

 <dt>...</dt>
<dd>Additional arguments passed to
 <code>readCdfCellIndices</code>.</dd>

</dl>

The reconstructor function have to:<ol>
<li>Accept a <code><a href='https://rdrr.io/r/base/list.html'>list</a></code> structure as its first argument.</li>
<li>Require no other arguments.</li>
<li>Return a <code><a href='https://rdrr.io/r/base/list.html'>list</a></code> structure of identical length as the input one.
 In other words, it must not change the number of units nor
 the order of units.</li>
</ol>

The reconstructor function may:<ol>
<li>Rearrange the groups or change the number of groups, for
 instance by utilizing <code>applyCdfGroups</code>.</li>
<li>Exclude some cells, for instance by excluding MMs.</li>
</ol>

setRestructor.AffymetrixCdfFile: Specifies a function through which

Description

Usage

Value

Arguments

Requirements

See Also