setupExampleData.AromaAffymetrix

AromaAffymetrix.setupExampleData

setupExampleData,AromaAffymetrix-method

setupExampleData

Setups example data in the current directory.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

setupExampleData.AromaAffymetrix function

<dl> <dt>dataset, chipType</dt>
<dd><code><a href="/link/character?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::character">character</a></code> strings specifying the data set
 and the chip type to install.</dd> <dt>dirs</dt>
<dd>A <code><a href="/link/character?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::character">character</a></code> <code><a href="/link/vector?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::vector">vector</a></code> specifying which directories to setup.</dd> <dt>mustWork</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, an error is thrown if the requested data set
 could not be installed, otherwise not.</dd> <dt>validate</dt>
<dd>If <code><a href="/link/TRUE?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::TRUE">TRUE</a></code>, the installed files are also validated,
 otherwise not.</dd> <dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Author

Setups example data in the current directory — setupExampleData.AromaAffymetrix

<dl>

 <dt>dataset, chipType</dt>
<dd><code><a href='https://rdrr.io/r/base/character.html'>character</a></code> strings specifying the data set
 and the chip type to install.</dd>

 <dt>dirs</dt>
<dd>A <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> specifying which directories to setup.</dd>

 <dt>mustWork</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, an error is thrown if the requested data set
 could not be installed, otherwise not.</dd>

 <dt>validate</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, the installed files are also validated,
 otherwise not.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

</dl>

Setups example data in the current directory

setupExampleData.AromaAffymetrix: Setups example data in the current directory

Description

Usage

Value

Arguments

Author