eDNA_model-class

eDNA_model_lm-class

eDNA_model_lmer-class

An S4 object holding the results of a model fit by <code>eDNA_lm*</code>

Provides a modeling framework for the design and analysis of experiments collecting environmental DNA.

Matt Espe

artemis

Analysis and Simulation of Environmental DNA Experiments

Myfanwy Johnston

eDNA_model-class function

<dl class="dl-horizontal">
<dt><code>ln_conc</code></dt><dd>matrix, the estimated latent variable, log(eDNA concentration)</dd></dl><dt><code>Cq_star</code></dt><dd>matrix, the predicted CQ value for each obs</dd><dt><code>betas</code></dt><dd>matrix, the posterior estimate for each beta in the model</dd><dt><code>sigma_ln_eDNA</code></dt><dd>the estimated measurement error on ln_eDNA</dd><dt><code>formula</code></dt><dd>the formula used to fit the model</dd><dt><code>x</code></dt><dd>the model.matrix used to fit the model</dd><dt><code>std_curve_alpha</code></dt><dd>the alpha for the std. curve conversion formual used</dd><dt><code>std_curve_beta</code></dt><dd>the beta for the std. curve conversion formula used</dd><dt><code>upper_Cq</code></dt><dd>the upper limit for CQ</dd><dt><code>stanfit</code></dt><dd>the result from rstan::sampling</dd><dt><code>random_x</code></dt><dd>data.frame of the grouping variables used</dd><dt><code>random_sd</code></dt><dd>the estimated stdev. of each of the random effects</dd>

eDNA_model-class: eDNA model fit results

Description

Arguments

Slots