eDNA_simulation-class

eDNA_simulation_lmer-class

eDNA_simulation_lm-class

An S4 object holding the results of <code>sim_eDNA_lm*</code>.

Provides a modeling framework for the design and analysis of experiments collecting environmental DNA.

Matt Espe

artemis

Analysis and Simulation of Environmental DNA Experiments

Myfanwy Johnston

eDNA_simulation-class function

<dl class="dl-horizontal">
<dt><code>ln_conc</code></dt><dd>matrix, simulated log(eDNA concentration)</dd></dl><dt><code>Cq_star</code></dt><dd>matrx, simulated CQ star</dd><dt><code>formula</code></dt><dd>the formula used</dd><dt><code>variable_levels</code></dt><dd>the variable levels used</dd><dt><code>betas</code></dt><dd>the effect levels used</dd><dt><code>x</code></dt><dd>the model matrix used</dd><dt><code>std_curve_alpha</code></dt><dd>the alpha for the std. curve conversion formual used</dd><dt><code>std_curve_beta</code></dt><dd>the beta for the std. curve conversion formula used</dd><dt><code>upper_Cq</code></dt><dd>the upper limit for CQ</dd><dt><code>groups</code></dt><dd>the grouping variables used</dd><dt><code>random_sd</code></dt><dd>the stdev of the random effects</dd>

eDNA_simulation-class: eDNA simulation results

Description

Arguments

Slots