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asbio (version 0.3-1)
A collection of statistical tools for biologists
Description
Contains functions from the book: "Applied Statistics for Biologists"
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Install
install.packages('asbio')
Monthly Downloads
3,042
Version
0.3-1
License
GPL (>= 2)
Maintainer
Ken Aho
Last Published
June 10th, 2010
Functions in asbio (0.3-1)
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asthma
Asthma repeated measures dataset from Littell et al. (2002)
chi.plot
Chi plots for diagnosing multivariate independence.
ci.mu.z
Z and t confidence intervals for mu.
Hotelling
Hotelling T-squared test
rankindex.new
Compares the efficacy of resemblance measures for a particular data scenario.
Preston.dist
Preston diversity analysis
panel.cor.res
functions for customizing correlation matrices
power.z.test
Power analysis for a one sample z-test
get.dist
Calculates 26 possible resemblance measures.
bootstrap
A simple function for bootstrapping
win
Winsorize data
samp.dist
Animated representations of a statistic's sampling distribution
radiation.heatl
Radiation-heatload algorithm
alpha.div
Functions for calculating alpha diversity.
Pairw.test
Conducts pairwise post hoc tests associated with an ANOVA.
modlevenes.test
Modified Levene's test
pseudo.v
Jacknife pseudo-values
rat
Rat glycogen data from Sokal and Rohlf (1995).
huber.NR
Huber M-estimator iterative least squares algorithm
G.mean
Geometric mean
shade.norm
Shading functions for interpretation of pdf probabilities.
anm.coin
Animated demonstration of frequentist binomial convergence of probability using a coin flip.
bv.boxplot
Bivariate boxplots
exercise.repeated
Repeated measures data for an exercise experiment.
starkey
DEM data from the Starkey experimental forest in NE Oregon.
world.pop
Population levels in various countries since 1980
D.sq
Mahalanobis distance for two sites using a pooled covariance matrix
MS.test
Mack-Skillings test
stan.error
Variance and standard error estimators for the sampling distribution of the sample mean
H.mean
Harmonic mean
Shep.comp
Shepard plot type comparisons for PCoA
alfalfa.split.plot
An agricultural split plot design
km
Kaplan-Meier survivorship.
beta.div
Beta diversity functions
cliff.env
Environmental data for the community dataset cliff.sp
trim.me
Trim data
world.co2
World CO2 levels, by country, from 1980 to 2006
MC.test
Monte Carlo hypothesis testing for two samples.
one.sample.z
One sample z-test
runExpDesign
Simple experimental design plots
anm.samp.design
Animated demonstration of randomized sampling designs
HL.mean
Hodges-Lehman estimator of location
e.cancer
Esophageal cancer data modified slightly to create a balanced three-way factorial design
partial.resid.plot
Partial residual plots for interpretation of multiple regression.
anm.ExpDesign
Animated depiction of experimental designs
runSampDesign
Plots of random sampling designs
coin.flip
Demonstration of frequentist convergence of probability with a coin flip.
shade.norm.tck
GUI display of probability
portneuf
Portneuf River longitudinal N and P data.
DH.test
Doornick-Hansen test for multivariate normality.
Kappa
Calculates kappa statistic and other classification error statistics
R.bw
Biweight midvariance, and biweight midcorrelation.
Glucose2
Glucose Levels Following Alcohol Ingestion
cuckoo
Tippett cuckoo egg data
BDM.test
Brunner-Dette-Munk test
bound.angle
Angle of azimuith to a boundary.
Mode
Sample mode
PM2.5
PM 2.5 pollutant data from Pocatello Idaho.
ci.median
Confidence interval for the median
AP.test
Agresti-Pendergrast test
bplot
Barplots with standard errors and CIs for pairwise comparisons.
ES.May
May's effective specialization index
Semiconductor
Split plot computer chip data from Littell et al. (2006).
ConDis.matrix
Calculation and display of concordant and discordant pairs
Mrpp
Multi-response permutation procedure. A wrapper for mrpp from vegan.
ci.p
Confidence interval estimation for the binomial parameter p.
ci.mu.oneside
One sided confidence intervlas for mu.
Kullback
Kullback test for equal covariance matrices.
V.mat
Pooled covariance matrices for multivariate procedures.
boot.ci.M
Bootstrap CI of M-estimators differences of two samples
Venn
Venn probability diagrams for an event with two outcomes
R.pb
Percentage bend correlation
KW.multi.comp
Multiple pairwise comparison procedure to accompany a Kruskal-Wallis test
FR.multi.comp
Multiple pairwise comparison procedure to accompany a Friedman test.