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asbio (version 1.6-1)

A Collection of Statistical Tools for Biologists

Description

Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

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Version

Install

install.packages('asbio')

Monthly Downloads

4,866

Version

1.6-1

License

GPL (>= 2)

Maintainer

Ken Aho

Last Published

January 12th, 2020

Functions in asbio (1.6-1)

Barro Colorado Island Tree Counts

May's effective specialization index

PM 2.5 pollutant data from Pocatello Idaho.

Maximum likelihood algorithm for determining the binomial dispersal coefficient

Simple functions for MCMC demonstrations

PCBs and herring egg thickness

Mack-Skillings test

Kullback test for equal covariance matrices.

Monte Carlo hypothesis testing for two samples.

Venn probability diagrams for an event with two outcomes

Soil potassium analyses from 8 laboratories

Animated demonstration of frequentist binomial convergence of probability using a coin flip.

Agrostis variabilis cover measurements

Calculates kappa statistic and other classification error statistics

Conversion of binary digits to decimal numbers

Animated depictions of population growth

Glucose Levels Following Alcohol Ingestion

Wood boring beetle data.

Caribou count data

Split plot computer chip data from Littell et al. (2006)

R hat MCMC convergence statistic

Animated depiction of six-sided die throws.

Preston diversity analysis

Animated depictions of Lotka-Volterra competition and exploitation models

Fern environmental sex determination data

Asthma repeated measures dataset from Littell et al. (2002)

Area under a receiver operating characteristic (ROC) curve

Animation of Markov Chain Monte Carlo walks in bivariate normal space

Animated plot of the least squares function.

Bromus tectorum dataset

Barplots with error bars (including interval plots)

Animated demonstration of density for a continuous pdf

Chronic ailment counts for urban and rural women in Australia

Aids and veterans dataset

Anscombe's quartet

alfalfa.split.plot

An agricultural split plot design

Animation demonstrations of confidence intervals.

anm.samp.design

Animated demonstration of randomized sampling designs

Hodges-Lehman estimator of location

CSIRO d13C-CO2 data from Rubino et al., A revised 1000 year atmospheric 13C-CO2 record from Law Dome and South Pole, Antarctica

Anolis lizard contingency table data

Ant honeydew data

Bootstrap confidence intervals

Pulldown menus for 'asbio' interactive graphical functions

Bayesian linear models with uniform priors

Functions for calculating alpha diversity.

Agresti crabs dataset

Tippett cuckoo egg data

Animated depiction of experimental designs

Dataset of mammal traits from Ramsey and Schaefer (1997)

Confidence interval for the product of two proportions

Animated plot of least squares function.

Confidence interval for the median

Baby walking times experimental data

Grizzly bear litter sizes

Alpine soil temperature and moisture time series

Confidence interval estimation for the binomial parameter pi using five popular methods.

Bombus pollen data.

Confidence intervals for the ratio of binomial and multinomial proportions

Bootstrap CI of M-estimators differences of two samples

Animated plots of log-likelihood functions

Bone development data

Confidence intervals for stratified random samples.

Confidence intervals for ratios of proportions when the denominator is known

Mule deer telemetry data

Maternal deer data

One sided confidence interval for mu.

Z and t confidence intervals for mu.

Confidence interval for sigma squared.

Make plots of bivariate normal distributions

Bivariate boxplots

Environmental data for the community dataset cliff.sp

Bat forearm length as a function of bat age

Agricultural factorial design

Corn yield data

Kaplan-Meier survivorship.

One sample z-test

Loess 2D and 3D smooth plots

Contingency data for high school marijuana, alcohol, and cigarette use

Fire data from Yellowstone National Park

crab gill and body weight data

Creosote bush counts

Magnet pain relief data

Dissolved levels in locations above and below a town

Ipomopsis fruit yield data

exercise.repeated

Repeated measures data for an exercise experiment.

Florida state death penalty data

Functions for customizing correlation matrices

Mountain island biogeographic data

Hamilton depression scores before and after drug treatment

Enzymatic rate data for the phospholipase protein ExoU

Heart rate data from Milliken and Johnson (2009)

Facebook performance metrics for data mining and machine learning

Partial correlations of determination in multiple regression

Datasets for resource use and availability

Calculates joint confidence intervals for parameters in linear models using a Bonferroni procedure.

Fly sex and longevity

Garment Latin square data from Littell et al. (2002)

Australian frog calls following fire

Plots confidence intervals and/or bars with letters indicating significant differences for objects from class pairw

A simple function for bootstrapping

Mouse life expectancy data

Mountain goat data from Yellowstone National Park

Angle of azimuth to a boundary.

Jacknife pseudo-values

Perpendicularity

Nitrogen content of soils under pika haypiles

Plant traits for 136 species

Dataset of salary attributes for male and female workers from Ramsey and Schafer (1997)

Chi plots for diagnosing multivariate independence.

Creates plots for one way ANCOVAs

Yellowstone NP cliff community data

AIC, AICc, BIC, Mallow's Cp, and PRESS evaluation of linear models

prediction sum of squares

Fruit weight data from Littell et al. (2002)

Esophageal cancer data modified slightly to create a balanced three-way factorial design

Efficiency of a randomized block design compared to a CRD

Likelihood ratio test for tabular data

Concrete strength dataset for data mining

Huber M-estimator of location

Huber M-estimator iterative least squares algorithm

Visualize the Hardy Weinberg equilibrium

Gibbs sampling of normal hierarchical models

Modified Levene's test

Mosquito wing length data

Huber one step M-estimator

Visual illusions illustrating human perception errors.

Nearest neighbor boundary coordinates

Prostate cancer data

Random draws from a scaled inverse chi-square distribution

Permutation test for two and three way factorial designs

partial.resid.plot

Partial residual plots for interpretation of multiple regression.

Portneuf River longitudinal N and P data

Multiple pairwise comparison procedure to accompany a Kruskal-Wallis test

Plots a simple linear regression along with confidence and prediction intervals.

Jackknife standard error from a set of pseudovalues

Normal quantile plots for single or multiple factor levels

Biweight midvariance, and biweight midcorrelation.

Welch tests controlled for simultaneous inference

Polyamine data from Hollander and Wolfe (1999)

One sample t-test

CO2 exchange time series data

Visualization of the M-estimation function

Patient responses to myeloma drug treatments

Visualize the sampling distribution of Pearson's product moment correlation

Potash/cotton strength data

Interactive worksheet for logical and fallacious arguments

A multivariate normal dataset for data mining

Interactive smoother demonstrations

Depiction of the effect of random level selection on inferences concerning fixed effects

Sample skewness and kurtosis

Visualize t-tests

Snoring and heart disease contingency data

Percentage bend correlation

Conducts pairwise post hoc and planned comparisons associated with an ANOVA

DEM data from the Starkey experimental forest in NE Oregon

Mammalian BMR and biomass data from Savage et al. (2004)

del14C in the atmosphere from 1700-1950

Unbalanced and balanced linear models

Shading functions for interpretation of pdf probabilities.

Regression linear model derivation from linear algebra

Visualize important non-linear functions

American gizzard shad data

Population levels in various countries from 1980-2006

see.exppower.tck

Visualize exponential power functions

Matched pairs schizophrenia data

see.accPrec.tck

Interactive depiction of precision and accuracy

Fisher's Rothamsted potato data

Multiple pairwise comparison procedure to accompany a Friedman test.

ANOVA linear models

Interactive depiction of the multinomial distribution

Interactive visualization of least squares regression.

trim.ranef.test

Robust test for random factors using trimmed means.

Visualize ANCOVA mechanics

Power analysis for a one sample z-test

Species richness and environmental variables from Mt Washburn

Spider web length data

SO2 data for 32 US cities with respect to 6 explanatory variables

Robust one way trimmed means test.

Variance and standard error estimators for the sampling distribution of the sample mean

Rat glycogen data from Sokal and Rohlf (2012)

Tukey's test of additivity.

Agricultural randomized block design

Whickham contingency table data for smokers and survivorship

Interactive depiction of type I and type II error and power

Interactive depiction of type I and II error

Refinery CO dataset

Animated representation of sampling distribution basics

Interactive depiction of the ANOVA mechanism

see.regression.tck

Demonstration of regression mechanics

Interactive depiction of ROC curves

Animated and/or snapshot representations of a statistic's sampling distribution

see.cor.range.tck

Depict the effect of range on correlation

selftest.se.tck1

Interactive self-testing statistical questions

Transition matrix analysis

White wine quality data for data mining

World CO2 levels, by country, from 1980 to 2006

Salsify height dataset

see.rEffect.tck

Visualize random effects model

GUI display of probability

Compilations of genus and species counts from Simberloff (1970)

Veneer data from Littell et al. (2002)

Scandinavian site by species community matrix

Wildebeest carcass categorical data

Agresti-Pendergrast test

Doornik-Hansen test for multivariate normality.

Bayesian graphical summaries for discrete or categorical data.

Atmospheric carbon and D14C measurements

Calculation and display of concordant and discordant pairs

Mahalanobis distance for two sites using a pooled covariance matrix

Tree presence/absence data from Barro Colorado island

Brunner-Dette-Munk test