A tool to interactively select points to track peak trajectories on plots, for results from functions such as eTimeOpt, EHA, eAsm.
trackPeak(dat,threshold=NULL,pick=T,minVal=NULL,maxVal=NULL,dmin=NULL,dmax=NULL,
xmin=NULL,xmax=NULL,ymin=NULL,ymax=NULL,h=6,w=4,ydir=-1,
palette=6,ncolors=100,genplot=T,verbose=T)
Data frame with results to evaluate. It must have the following format: column 1=parameter to track (e.g., frequency, sedimentation rate, etc.; x-axis of plot); remaining columns (2 to n)=parameter to evaluate for peak identification (color on plot); titles for columns 2 to n must be the location (depth/height/time; y-axis of plot). Note that this format is ouput by functions eha, eTimeOpt, eAsm.
Threshold level for filtering peaks. By default all peak maxima reported.
Pick the peaks of interest using a graphical interface? (T or F). Only activated if genplot=T.
Minimum parameter value for analysis (e.g., frequency, sedimentation rate, etc.).
Maximum parameter value for analysis (e.g., frequency, sedimentation rate, etc.).
Minimum depth/height/time for analysis. NOT ACTIVATED YET!
Maximum depth/height/time for analysis. NOT ACTIVATED YET!
Minimum parameter value for PLOTTING.
Maximum parameter value for PLOTTING.
Minimum depth/height/time for PLOTTING.
Maximum depth/height/time for PLOTTING.
Height of plot in inches.
Width of plot in inches.
Direction for y-axis in plots (depth or height). -1 = values increase downwards (slower plotting!), 1 = values increase upwards.
What color palette would you like to use? (1) rainbow, (2) grayscale, (3) blue, (4) red, (5) blue-white-red, (6) viridis
Number of colors to use in plot.
Generate summary plots? (T or F)
Verbose output? (T or F)
eha and eTimeOpt