atlantistools (version 0.4.3)

get_ref_fishbase: Extract the bibliographic info from www.fishbase.org.

Description

Extract bibliographic information for growth parameters (linf, k, t0) from www.fishbase.org

Usage

get_ref_fishbase(ref_id, mirror = "se")

Arguments

ref_id

vector of reference ids.

mirror

Character string defining the url mirror to use. Defaults to se. In case data extraction is slow use a different mirror. Try to avoid frequently used mirrors like uk or com.

Value

Dataframe

Examples

# NOT RUN {
df <- get_growth_fishbase("Scyliorhinus canicula")

df$data_ref[df$data_ref == df$main_ref] <- NA
df <- tidyr::gather_(data = df,
                     key_col = "ref_type",
                     value_col = "ref_id",
                     gather_cols = c("main_ref", "data_ref"), na.rm = TRUE)
ref_id <- unique(df$ref_id)
get_ref_fishbase(ref_id)
# }