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atlas (version 1.0.0)

Stanford 'ATLAS' Search Engine API

Description

Stanford 'ATLAS' (Advanced Temporal Search Engine) is a powerful tool that allows constructing cohorts of patients extremely quickly and efficiently. This package is designed to interface directly with an instance of 'ATLAS' search engine and facilitates API queries and data dumps. Prerequisite is a good knowledge of the temporal language to be able to efficiently construct a query. More information available at .

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Version

Install

install.packages('atlas')

Monthly Downloads

215

Version

1.0.0

License

GPL-3

Maintainer

Last Published

August 10th, 2018

Functions in atlas (1.0.0)

atlas.status

Returns the status of the ATLAS
atlas.connect

Connects to ATLAS instance
atlas.contains

Returns the statistics information
atlas.csv

Queries ATLAS with a CSV() command and imports the contents of the csv into a data frame
atlas.dump

Dumps patient from ATLAS to a file on disk
atlas.query

Queries ATLAS and returns a list of patient IDs