choose_database

It allows the user to choose the databases on which to perform the enrichment analysis. Either it returns all the possible databases or a subset of them.

Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) <doi:10.1186/s13059-014-0550-8>. The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.

Fabio Ticconi

autoGO

Auto-GO: Reproducible, Robust and High Quality Ontology
Enrichment Visualizations

Isabella Grassucci

Eleonora Sperandio

Alice Massacci

Lorenzo D'Ambrosio

Matteo Pallocca

choose_database function

<dl><dt>db_search</dt>
<dd>(Default = NULL), is the string pattern to be matched against the list of enrichR databases. Any matching DBs will be returned.</dd></dl>

Arguments

choose_database — choose_database

<dl>

<dt>db_search</dt>
<dd>(Default = NULL), is the string pattern to be matched against the list of enrichR databases. Any matching DBs will be returned.</dd>

</dl>

choose_database: choose_database

Description

Usage

Value

Arguments

Examples