ballgown (version 2.4.2)

eexpr: extract exon-level expression measurements from ballgown objects

Description

extract exon-level expression measurements from ballgown objects

Usage

eexpr(x, meas = "rcount")
"eexpr"(x, meas = "rcount")

Arguments

x

a ballgown object

meas

type of measurement to extract. Can be "rcount", "ucount", "mrcount", "cov", "mcov", or "all". Default "rcount".

Value

exon-by-sample matrix containing exon-level expression values (measured by meas). If meas is "all", or x@RSEM is TRUE, a data frame is returned, containing all measurements and location information.

Examples

data(bg)
exon_rcount_matrix = eexpr(bg)
exon_ucount_matrix = eexpr(bg, 'ucount')
exon_data_frame = eexpr(bg, 'all')