This validation dataset gives the names, the primary structure (amino acid sequences), and the secondary structure of 3,344 individual proteins from the SCOPe 2.03 data set filtered at 30% sequence identity as used in the paper cited below.
bamboo.validation.astral30A data frame containing 3,344 observations on the following 3 variables.
name: protein name;
primary: protein primary structure (amino acid sequence) in 20 letters denoting the 20 amino acids;
hetc: secondary structure in 4 letters denoting the 4 structure types: helix (H), strand (E), turn (T) and coil (C).
Q. Li, D. B. Dahl, M. Vannucci, H. Joo, J. W. Tsai (2014), Bayesian Model of Protein Primary Sequence for Secondary Structure Prediction, PLOS ONE, 9(10), e109832. <DOI:10.1371/journal.pone.0109832>