Internal bapred functions.
Dt(rho)
VarInflation(dta, Blist, maxnbfactors, dig)
aprior(gamma.hat)
avedistTwo(xb1, xb2)
bivprob(rho, lower, upper = -lower, mean = 0)
bprior(gamma.hat)
build.design(vec, des = NULL, start = 2)
design.mat(mod, numCov)
diffexprmAfterBR(x, xbrlist, y, batch, batchessuited)
emfahighdim(eps, nbf, minerr = 1e-06, maxiter = 100)
extractAffybatch(inds, abo)
fuzzywilcox(x, y)
it.sol(sdat, g.hat, d.hat, g.bar, t2, a, b, conv = 1e-04)
kldistTwo(xb1, xb2)
list.batch(mod)
mypvcaBatchAssess(X, factordata, threshold)
nbfactors(dta, maxnbfactors = 12, diagnostic.plot = FALSE, minerr = 0.001,
maxiter = 100)
normalizeAffyBatchqntval(abatch, type = c("separate", "pmonly", "mmonly", "together"))
normalizeqntadd(abo, qnt.scale)
normalizeqntadd2(x, qnt.scale)
normalizeqntval(x)
plotcomp(xp, groups, y, alpha, col = rainbow(length(groupsun)),
xlim, ylim, ...)
postmean(g.hat, g.bar, n, d.star, t2)
postvar(sum2, n, a, b)
# S3 method for combat
print(x, ...)
# S3 method for fabatch
print(x, ...)
# S3 method for meancenter
print(x, ...)
# S3 method for noba
print(x, ...)
# S3 method for qunormtrain
print(x, ...)
# S3 method for ratioa
print(x, ...)
# S3 method for ratiog
print(x, ...)
# S3 method for rmatrain
print(x, ...)
# S3 method for standardize
print(x, ...)
# S3 method for svatrain
print(x, ...)
sepscoreTwo(xb1, xb2, k = 10)
skewdivTwo(xb1, xb2)
summarizeadd2(abo, probe.effects)
summarizeval2(abo)These internal bapred functions are not usually called directly by the user.