gzcon: (De)compress I/O Through Connections

Description

gzcon provides a modified connection that wraps an existing connection, and decompresses reads or compresses writes through that connection. Standard gzip headers are assumed.

Usage

gzcon(con, level = 6, allowNonCompressed = TRUE, text = FALSE)

Arguments

con

a connection.

level

integer between 0 and 9, the compression level when writing.

allowNonCompressed

logical. When reading, should non-compressed input be allowed?

text

logical. Should the connection be text-oriented? This is distinct from the mode of the connection (must always be binary). If TRUE, pushBack works on the connection, otherwise readBin and friends apply.

Value

An object inheriting from class "connection". This is the same connection number as supplied, but with a modified internal structure. It has binary mode.

Details

If con is open then the modified connection is opened. Closing the wrapper connection will also close the underlying connection.

Reading from a connection which does not supply a gzip magic header is equivalent to reading from the original connection if allowNonCompressed is true, otherwise an error.

Compressed output will contain embedded NUL bytes, and so con is not permitted to be a textConnection opened with open = "w". Use a writable rawConnection to compress data into a variable.

The original connection becomes unusable: any object pointing to it will now refer to the modified connection. For this reason, the new connection needs to be closed explicitly.

Examples

Run this code

## Uncompress a data file from a URL
z <- gzcon(url("http://www.stats.ox.ac.uk/pub/datasets/csb/ch12.dat.gz"))
# read.table can only read from a text-mode connection.
raw <- textConnection(readLines(z))
close(z)
dat <- read.table(raw)
close(raw)
dat[1:4, ]


## gzfile and gzcon can inter-work.
## Of course here one would use gzfile, but file() can be replaced by
## any other connection generator.
zz <- gzfile("ex.gz", "w")
cat("TITLE extra line", "2 3 5 7", "", "11 13 17", file = zz, sep = "\n")
close(zz)
readLines(zz <- gzcon(file("ex.gz", "rb")))
close(zz)
unlink("ex.gz")
<!-- % Cygwin seems to require a different name -->
zz <- gzcon(file("ex2.gz", "wb"))
cat("TITLE extra line", "2 3 5 7", "", "11 13 17", file = zz, sep = "\n")
close(zz)
readLines(zz <- gzfile("ex2.gz"))
close(zz)
unlink("ex2.gz")