These functions provide a low-level interface to the computer's file system.
file.create(…, showWarnings = TRUE)
file.exists(…)
file.remove(…)
file.rename(from, to)
file.append(file1, file2)
file.copy(from, to, overwrite = recursive, recursive = FALSE,
copy.mode = TRUE, copy.date = FALSE)
file.symlink(from, to)
file.link(from, to)
Sys.junction(from, to)character vectors, containing file names or paths.
character vectors, containing file names or paths.
For file.copy and file.symlink
and Sys.junction
to can alternatively be the path to a single existing directory.
logical; should existing destination files be overwritten?
logical; should the warnings on failure be shown?
logical. If to is a directory, should
directories in from be copied (and their contents)? (Like
cp -R on POSIX OSes.)
logical: should file permission bits be copied where possible?
logical: should file dates be preserved where
possible? See Sys.setFileTime.
These functions return a logical vector indicating which operation succeeded for each of the files attempted. Using a missing value for a file or path name will always be regarded as a failure.
If showWarnings = TRUE, file.create will give a warning
for an unexpected failure.
Case-insensitive file systems are the norm on Windows and macOS, but can be found on all OSes (for example a FAT-formatted USB drive is probably case-insensitive).
These functions will most likely match existing files regardless of case on such file systems: however this is an OS function and it is possible that file names might be mapped to upper or lower case.
Symbolic links in the sense of POSIX file systems do not exist on Windows: however, NTFS file systems support two similar concepts.
There are ‘junctions’ (or ‘junction points’),
unfortunately without a public API: a Windows version of the Unix
concept of mounting one directory on another. A junction can link
directories located on the same or different local volumes of the same
computer, but cannot link to a network drive. Function
Sys.junction creates one or more junctions: to should
either specify a single existing directory or a set of non-existent
file paths of the same length as from. (Command
mklink /J can also be used to create junctions.)
A version of symbolic linking to files/directories was implemented
more recently, and file.symlink makes use of that interface.
However, it has restrictions which are crippling. First, the user
needs permission to make symbolic links, and that permission is not
normally granted except to Administrator accounts (note: not users
with Administrator rights): further many users report that whereas the
Policy Editor appears to be able to grant such rights, the API still
reports insufficient permissions. Second, the interface needs to know
if from is a file or a directory (and it need not yet exist):
we have implemented this to allow linking from a directory only if it
currently exists.
Care is needed with removing a junction (and most likely also a symbolic link): many tools will remove the target and its contents.
Always check the return value of these functions when used in package
code. This is especially important for file.rename, which has
OS-specific restrictions (and note that the session temporary
directory is commonly on a different file system from the working
directory): it is only portable to use file.rename to change
file name(s) within a single directory.
The … arguments are concatenated to form one character
string: you can specify the files separately or as one vector.
All of these functions expand path names: see path.expand.
file.create creates files with the given names if they do not
already exist and truncates them if they do. They are created with
the maximal read/write permissions allowed by the
‘umask’ setting (where relevant). By default a warning
is given (with the reason) if the operation fails.
file.exists returns a logical vector indicating whether the
files named by its argument exist. (Here ‘exists’ is in the
sense of the system's stat call: a file will be reported as
existing only if you have the permissions needed by stat.
Existence can also be checked by file.access, which
might use different permissions and so obtain a different result.
Note that the existence of a file does not imply that it is readable:
for that use file.access.) What constitutes a
‘file’ is system-dependent, but should include directories.
(However, directory names must not include a trailing backslash or
slash on Windows.) Note that if the file is a symbolic link on a
Unix-alike, the result indicates if the link points to an actual file,
not just if the link exists.
Lastly, note the different function exists which
checks for existence of R objects.
file.remove attempts to remove the files named in its argument.
On most Unix platforms ‘file’ includes empty
directories, symbolic links, fifos and sockets. On Windows,
‘file’ means a regular file and not, say, an empty directory.
file.rename attempts to rename files (and from and
to must be of the same length). Where file permissions allow
this will overwrite an existing element of to. This is subject
to the limitations of the OS's corresponding system call (see
something like man 2 rename on a Unix-alike): in particular
in the interpretation of ‘file’: most platforms will not rename
files from one file system to another. (On Windows,
file.rename can rename files but not directories across
volumes.) On platforms which allow directories to be renamed,
typically neither or both of from and to must a
directory, and if to exists it must be an empty directory.
file.append attempts to append the files named by its
second argument to those named by its first. The R subscript
recycling rule is used to align names given in vectors
of different lengths.
file.copy works in a similar way to file.append but with
the arguments in the natural order for copying. Copying to existing
destination files is skipped unless overwrite = TRUE. The
to argument can specify a single existing directory. If
copy.mode = TRUE file read/write/execute permissions are copied
where possible, restricted by ‘umask’. (On Windows this
applies only to files.) Other security attributes such as ACLs are not
copied. On a POSIX filesystem the targets of symbolic links will be
copied rather than the links themselves, and hard links are copied
separately. Using copy.date = TRUE may or may not copy the
timestamp exactly (for example, fractional seconds may be omitted),
but is more likely to do so as from R 3.4.0.
file.symlink and file.link make symbolic and hard links
on those file systems which support them. For file.symlink the
to argument can specify a single existing directory. (Unix and
macOS native filesystems support both. Windows has hard links to
files on NTFS file systems and concepts related to symbolic links on
recent versions: see the section below on the Windows version of this
help page. What happens on a FAT or SMB-mounted file system is OS-specific.)
file.info, file.access, file.path,
file.show, list.files,
unlink, basename,
path.expand.
Sys.glob to expand wildcards in file specifications.
file_test, Sys.readlink (for ‘symlink’s).
https://en.wikipedia.org/wiki/Hard_link and https://en.wikipedia.org/wiki/Symbolic_link for the concepts of links and their limitations.
# NOT RUN {
cat("file A\n", file = "A")
cat("file B\n", file = "B")
file.append("A", "B")
file.create("A") # (trashing previous)
file.append("A", rep("B", 10))
if(interactive()) file.show("A") # -> the 10 lines from 'B'
file.copy("A", "C")
dir.create("tmp")
file.copy(c("A", "B"), "tmp")
list.files("tmp") # -> "A" and "B"
setwd("tmp")
file.remove("A") # the tmp/A file
file.symlink(file.path("..", c("A", "B")), ".")
# |--> (TRUE,FALSE) : ok for A but not B as it exists already
setwd("..")
unlink("tmp", recursive = TRUE)
file.remove("A", "B", "C")
# }
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