doJobCollection

Executes every job in a <code>JobCollection</code>.
This function is intended to be called on the slave.

As a successor of the packages 'BatchJobs' and 'BatchExperiments',
this package provides a parallel implementation of the Map function for high
performance computing systems managed by schedulers 'IBM Spectrum LSF'
(<https://www.ibm.com/products/hpc-workload-management>),
'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid
Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>),
'TORQUE/PBS'
(<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>),
or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>).
A multicore and socket mode allow the parallelization on a local machines,
and multiple machines can be hooked up via SSH to create a makeshift
cluster. Moreover, the package provides an abstraction mechanism to define
large-scale computer experiments in a well-organized and reproducible way.

Michel Lang

batchtools

Tools for Computation on Batch Systems

Bernd Bischl

Dirk Surmann

doJobCollection function

<dl><dt>jc</dt>
<dd>[<code>JobCollection</code>] 
Either an object of class &#8220;JobCollection&#8221; as returned by
<code>makeJobCollection</code> or a string with the path to file
containing a &#8220;JobCollection&#8221; as RDS file (as stored by <code>submitJobs</code>).</dd>
<dt>output</dt>
<dd>[<code>character(1)</code>] 
Path to a file to write the output to. Defaults to <code>NULL</code> which means
that output is written to the active <code><a href="/link/sink?package=batchtools&version=0.9.17" data-mini-rdoc="batchtools::sink">sink</a></code>.
Do not set this if your scheduler redirects output to a log file.</dd></dl>

Arguments

Execute Jobs of a JobCollection — doJobCollection

<dl>

<dt>jc</dt>
<dd>[<code>JobCollection</code>] 
Either an object of class &#8220;JobCollection&#8221; as returned by
<code>makeJobCollection</code> or a string with the path to file
containing a &#8220;JobCollection&#8221; as RDS file (as stored by <code>submitJobs</code>).</dd>


<dt>output</dt>
<dd>[<code>character(1)</code>] 
Path to a file to write the output to. Defaults to <code>NULL</code> which means
that output is written to the active <code><a href='https://rdrr.io/r/base/sink.html'>sink</a></code>.
Do not set this if your scheduler redirects output to a log file.</dd>

</dl>

doJobCollection: Execute Jobs of a JobCollection

Description

Usage

Value

Arguments

See Also

Examples