killJobs

Kill jobs which are currently running on the batch system.
In case of an error when killing, the function tries - after a short sleep - to kill the remaining
batch jobs again. If this fails three times for some jobs, the function gives up. Jobs that could be
successfully killed are reset in the Registry.

As a successor of the packages 'BatchJobs' and 'BatchExperiments',
this package provides a parallel implementation of the Map function for high
performance computing systems managed by schedulers 'IBM Spectrum LSF'
(<https://www.ibm.com/products/hpc-workload-management>),
'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid
Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>),
'TORQUE/PBS'
(<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>),
or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>).
A multicore and socket mode allow the parallelization on a local machines,
and multiple machines can be hooked up via SSH to create a makeshift
cluster. Moreover, the package provides an abstraction mechanism to define
large-scale computer experiments in a well-organized and reproducible way.

Michel Lang

batchtools

Tools for Computation on Batch Systems

Bernd Bischl

Dirk Surmann

killJobs function

<dl><dt>ids</dt>
<dd>[<code><a href="/link/data.frame?package=batchtools&version=0.9.17" data-mini-rdoc="batchtools::data.frame">data.frame</a></code> or <code>integer</code>] 
A <code><a href="/link/data.frame?package=batchtools&version=0.9.17" data-mini-rdoc="batchtools::data.frame">data.frame</a></code> (or <code><a href="https://rdatatable.gitlab.io/data.table/reference/data.table.html">data.table</a></code>)
with a column named &#8220;job.id&#8221;.
Alternatively, you may also pass a vector of integerish job ids.
If not set, defaults to the return value of <code>findOnSystem</code>.
Invalid ids are ignored.</dd>
<dt>reg</dt>
<dd>[<code>Registry</code>] 
Registry. If not explicitly passed, uses the default registry (see <code>setDefaultRegistry</code>).</dd></dl>

Arguments

Kill Jobs — killJobs

<dl>

<dt>ids</dt>
<dd>[<code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></code> or <code>integer</code>] 
A <code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></code> (or <code><a href='https://rdatatable.gitlab.io/data.table/reference/data.table.html'>data.table</a></code>)
with a column named &#8220;job.id&#8221;.
Alternatively, you may also pass a vector of integerish job ids.
If not set, defaults to the return value of <code>findOnSystem</code>.
Invalid ids are ignored.</dd>


<dt>reg</dt>
<dd>[<code>Registry</code>] 
Registry. If not explicitly passed, uses the default registry (see <code>setDefaultRegistry</code>).</dd>

</dl>

killJobs: Kill Jobs

Description

Usage

Value

Arguments

See Also