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bayesbio (version 1.0.0)

Miscellaneous Functions for Bioinformatics and Bayesian Statistics

Description

A hodgepodge of hopefully helpful functions. Two of these perform shrinkage estimation: one using a simple weighted method where the user can specify the degree of shrinkage required, and one using James-Stein shrinkage estimation for the case of unequal variances.

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Version

Install

install.packages('bayesbio')

Monthly Downloads

448

Version

1.0.0

License

GPL-3

Maintainer

Andrew McKenzie

Last Published

May 24th, 2016

Functions in bayesbio (1.0.0)

Jaccard index of two character vectors.

Creates random, unique character strings.

Merge data frames based on the nearest datetime differences.

Multiple pattern gsub.

Likelihood function of the James-Stein shrinkage factor.

Create a color-labeled horizontal bar plot in ggplot2.

Add values to the super- and sub-diagonals of a matrix.

Adjust p-values where n is less than p.

unequalVarShrink

Perform James-Stein shrinkage estimation using unequal variances

Weighted shrinkage estimation.

Perform PubMed queries on 2x2 combinations of term vectors.

bayesbio: Miscellaneous functions useful in bioinformatics and Bayesian statistics

Identify all duplicates values in a vector.

nearestTimeandID

Merge data frames based on the nearest datetime differences and an ID column. Also removes duplicate column names from the result.

cbind while converting missing entries to NA.