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beadarray (version 2.22.2)

makeQCProfile: Retrieve control beads

Description

Function to retrieve the bead IDs for a particular annotation platform

Usage

makeControlProfile(annoName, excludeERCC = TRUE)

Arguments

annoName
An abberviated name for the annotation packaget. e.g. Humanv3, MouseV2
excludeERCC
Ignore any controls with REPORTERGROUPNAME beginning with ERCC. These are a large collection of spike controls on the Humanv4 chip and can make some control tables too big if they are included.

Value

A matrix with one row per control bead-type giving the bead-level ID (ArrayAddressID) and control type.

Details

The function will use the relevant annotation package (if it is installed) and return all IDs that are present in the REPORTERGROUPNAME mapping. Note that this mapping is only available in versions 1.12.0 and greater.

Examples

Run this code

makeControlProfile("Humanv3")

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