beadarraySNP (version 1.38.0)

pdfChromosomesSmoothCopyNumber: reportWrappers

Description

Functions that help create pdf reports

Usage

pdfChromosomesSmoothCopyNumber(object, filename, ...)
pdfSamplesSmoothCopyNumber(object, filename, ...)
pdfChromosomeGainLossLOH(object, filename, ...)

Arguments

object

SnpSetIllumina object

filename

filename of output pdf file

...

arguments for report functions

Value

This function is used for its side effects

Details

These functions set up and perfom reporting to pdf files.

See Also

reportChromosomesSmoothCopyNumber, reportSamplesSmoothCopyNumber, reportChromosomeGainLossLOH

Examples

  ## Not run: data(chr17.260)
  ## Not run: data.nrm<-standardNormalization(chr17.260)
  ## Not run: pdfChromosomesSmoothCopyNumber(data.nrm, "Chr17.pdf", grouping=pData(data.nrm)$Group,smooth.lambda=4)