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beadarraySNP (version 1.38.0)

removeLowQualityProbes: Quality control of SnpSetIllumina objects

Description

Remove probes form a SnpSetIllumina object that show a low quality throughout the experiment

Usage

removeLowQualityProbes(object, cutoff = 0.25)

Arguments

object
SnpSetIllumina object
cutoff
numeric

Value

SnpSetIllumina object

Details

Probes that have a median value below cutoff * median value for the whole experiment are deleted from the object.