removeLowQualitySamples

<code><a rd-options="" href="/link/SnpSetIllumina-class?package=beadarraySNP&version=1.38.0" data-mini-rdoc="beadarraySNP::SnpSetIllumina-class">SnpSetIllumina-class</a></code> object

object

<code>numeric</code>. Samples that show a median intensity below this 
	     value in either Red or Green channel are removed

min.intensity

<code>numeric</code>. Samples that have less than this amount of valid 
    genotypes are removed

min.gt

factor or column name in <code>featureData</code> slot of <code>object</code>

subsample


	Remove samples from a SnpSetIllumina object that show a low quality 


manip

Importing data from Illumina SNP experiments and
performing copy number calculations and reports.

Jan Oosting

beadarraySNP

Normalization and reporting of Illumina SNP bead arrays

removeLowQualitySamples function

<code><a href="SnpSetIllumina-class" rd-options="">SnpSetIllumina-class</a></code> object

<code>numeric</code>. Samples that show a median intensity below this 
	     value in either Red or Green channel are removed

<code>numeric</code>. Samples that have less than this amount of valid 
    genotypes are removed

Remove samples from a SnpSetIllumina object that show a low quality

removeLowQualitySamples: Quality control of SnpSetIllumina objects

Description

Usage

Arguments

Value

Examples