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betapart (version 1.6)

Partitioning Beta Diversity into Turnover and Nestedness Components

Description

Functions to compute pair-wise dissimilarities (distance matrices) and multiple-site dissimilarities, separating the turnover and nestedness-resultant components of taxonomic (incidence and abundance based), functional and phylogenetic beta diversity.

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Version

Install

install.packages('betapart')

Monthly Downloads

2,606

Version

1.6

License

GPL (>= 2)

Maintainer

Andres Baselga

Last Published

March 13th, 2023

Functions in betapart (1.6)

coords.n

Spatial coordinates for Southern European Countries
boot.coefs.decay

Bootstrapping the parameters of distance-decay models computed with decay.model()
bray.part

Partitioning pair-wise Bray-Curtis dissimilarities
betatest

A data set of 4 communities, 107 species and a 4D functional space
ceram.s

Cerambycidae from Southern European Countries
ceram.n

Cerambycidae from Northern European Countries
betapart.core.abund

Core calculations of betapart for abundance-based dissimilarity measures
betapart.core

Core calculations of betapart
coords.s

Spatial coordinates for Southern European Countries
decay.model

Fitting distance decay models to pair-wise assemblage similarity
inter_geom_coord

Internal function to compute convexhull volume and vertice coordinates
phylo.beta.pair

Pair-wise phylogenetic dissimilarities
inter_rcdd_coord

Internal function to compute convexhull volume and vertice coordinates
inter_geom

Internal function to compute convexhull volume
functional.beta.multi

Multiple-site functional dissimilarities
functional.betapart.core.pairwise

functional.betapart.core.pairwise
functional.betapart.core

Core calculations of functional dissimilarities metrics
phylo.beta.multi

Multiple-site phylogenetic dissimilarities
functional.beta.pair

Pair-wise functional dissimilarities
inter_rcdd

Internal function to compute convexhull volume
phylo.betapart.core

Core calculations of phylogenetic dissimilarities metrics
plot.decay

Plotting distance decay curves from models computed with decay.model()
zdep

Assessing the differences between parameters of two distance-decay models computed with decay.model().
qhull.opt

Specifying control Values for convexhull volume estimation
bbsData

BBS data by state for two timeslices
beta.sample

Resampling multiple-site dissimilarity for n sites
beta.temp

Temporal change in community composition
beta.pair

Incidence-based pair-wise dissimilarities
beta.multi

Multiple-site dissimilarities
beta.pair.abund

Abundance-based pair-wise dissimilarities
beta.sample.abund

Resampling abundance-based multiple-site dissimilarity for n sites
beta.multi.abund

Abundance-based multiple-site dissimilarities
beta.para.control

Specifying Control Values for Internal Parallel Cluster
betapart

Partitioning beta diversity into turnover and nestedness components