biclust (version 2.0.3.1)

plotclust: Barplot of Bicluster

Description

Draws a graph to compare the values inside the diffrent biclusters with the values outside the bicluster

Usage

plotclust(res,x,bicluster=TRUE,legende=FALSE,noC=5,wyld=3,Titel="Plotclust",...)

Arguments

x

The data matrix

res

BiclustResult object if bicluster=TRUE else a normal kcca object.

bicluster

If TRUE,res is treated as a BiclustResult object

legende

Draws a legend.

noC

Number of Clusters drawn

wyld

Gives the distance between plot and axis.

Titel

Gives the title of the plot.

...

Additional plot options

Author

Sebastian Kaiser

See Also

bubbleplot for simultaneous representation of biclusters. parallelCoordinatesfor single representation of biclusters as lines of gene or condition profiles. drawHeatmapfor Heatmap representation of biclusters.

Examples

  s2=matrix(rnorm(400),20,20)
  s2[12:16,12:16]=rnorm(25,3,0.3)
  set.seed(1)
  bics <- biclust(s2,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
  iter.startup = 5, iter.layer = 30,  verbose = TRUE)
  plotclust(bics,s2)