bigsnpr (version 1.12.15)

[,bed,ANY,ANY,ANY-method: Accessor methods for class bed.

Description

Accessor methods for class bed.

Usage

# S4 method for bed,ANY,ANY,ANY
[(x, i, j, ..., drop = TRUE)
# S4 method for bed_light,ANY,ANY,ANY
[(x, i, j, ..., drop = TRUE)

Arguments

x

A bed object.

i

A vector of indices (or nothing). You can use positive and negative indices, and also logical indices (that are recycled).

j

A vector of indices (or nothing). You can use positive and negative indices, and also logical indices (that are recycled).

...

Not used. Just to make nargs work.

drop

Whether to drop dimensions (to a vector) when a dimension is 1. Default is TRUE.

Examples

bedfile <- system.file("extdata", "example-missing.bed", package = "bigsnpr")
(obj.bed <- bed(bedfile))
obj.bed[1:5, 1]
obj.bed[1:5, 1:2]
typeof(obj.bed[1, 1])