snp_asGeneticPos

Vector of integers specifying each SNP's chromosome.
Typically <code>&lt;bigSNP&gt;$map$chromosome</code>.

infos.chr

Vector of integers specifying the physical position
on a chromosome (in base pairs) of each SNP.
Typically <code>&lt;bigSNP&gt;$map$physical.pos</code>.

infos.pos

Directory where to download and decompress files.
Default is <code>tempdir()</code>. Directly use files there if already present.

Number of cores used. Default doesn't use parallelism.
You may use <a rd-options="" href="/link/nb_cores?package=bigsnpr&version=1.6.1" data-mini-rdoc="bigsnpr::nb_cores">nb_cores</a>.

ncores

Use genetic maps available at
<a href="https://github.com/joepickrell/1000-genomes-genetic-maps/">https://github.com/joepickrell/1000-genomes-genetic-maps/</a>
to interpolate physical positions (in bp) to genetic positions (in cM).

Easy-to-use, efficient, flexible and scalable tools
for analyzing massive SNP arrays <doi:10.1093/bioinformatics/bty185>.

Florian Privé

bigsnpr

Analysis of Massive SNP Arrays

Florian Priv<c3><a9>

Michael Blum

Hugues Aschard

snp_asGeneticPos function

Number of cores used. Default doesn't use parallelism.
You may use <a rd-options='' href='nb_cores'>nb_cores</a>.

Use genetic maps available at
<a href='https://github.com/joepickrell/1000-genomes-genetic-maps/'>https://github.com/joepickrell/1000-genomes-genetic-maps/</a>
to interpolate physical positions (in bp) to genetic positions (in cM).

snp_asGeneticPos: Interpolate to genetic positions

Description

Usage

Arguments

Value