snp_modifyBuild

A data frame with columns "chr" and "pos".

info_snp

Path to liftOver executable. Binaries can be downloaded at
<a href="https://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver">https://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver</a> for Mac
and at <a href="https://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver">https://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver</a>
for Linux.

liftOver

Genome build to convert from. Default is <code>hg18</code>.

from

Genome build to convert to. Default is <code>hg19</code>.

Modify the physical position information of a data frame
when converting genome build using executable liftOver.

Easy-to-use, efficient, flexible and scalable tools
for analyzing massive SNP arrays <doi:10.1093/bioinformatics/bty185>.

Florian Privé

bigsnpr

Analysis of Massive SNP Arrays

Florian Priv<c3><a9>

Michael Blum

Hugues Aschard

snp_modifyBuild function

Path to liftOver executable. Binaries can be downloaded at
<a href='https://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver'>https://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver</a> for Mac
and at <a href='https://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver'>https://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver</a>
for Linux.

snp_modifyBuild: Modify genome build

Description

Usage

Arguments

Value

References