download_1000G

Download 1000 genomes project (phase 3) data in PLINK bed/bim/fam format,
including 2490 (mostly unrelated) individuals
and ~1.7M SNPs in common with either HapMap3 or the UK Biobank.

Easy-to-use, efficient, flexible and scalable tools for analyzing
massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.

Florian Privé

bigsnpr

Analysis of Massive SNP Arrays

Michael Blum

Hugues Aschard

Bjarni Jóhann Vilhjálmsson

download_1000G function

<dl><dt>dir</dt>
<dd>The directory where to put the downloaded files.</dd>
<dt>overwrite</dt>
<dd>Whether to overwrite files when downloading and unzipping?
Default is <code>FALSE</code>.</dd>
<dt>delete_zip</dt>
<dd>Whether to delete zip after decompressing the file in it?
Default is <code>TRUE</code>.</dd></dl>

Arguments

Download 1000G — download_1000G

<dl>

<dt>dir</dt>
<dd>The directory where to put the downloaded files.</dd>


<dt>overwrite</dt>
<dd>Whether to overwrite files when downloading and unzipping?
Default is <code>FALSE</code>.</dd>


<dt>delete_zip</dt>
<dd>Whether to delete zip after decompressing the file in it?
Default is <code>TRUE</code>.</dd>

</dl>

download_1000G: Download 1000G

Description

Usage

Value

Arguments