covsoverlap

covsoverlap.enma

covsoverlap.nma

an object of class <code>"enma"</code> obtained from function
    <code>nma.pdbs</code>.

enma

number of CPU cores used to do the calculation.
    <code>ncore>1</code> requires package <squote>parallel</squote> installed.

ncore

a list object with elements <squote>U</squote> and <squote>L</squote>
    (e.g. as obtained from function <code>nma</code>) containing the
    eigenvectors and eigenvalues, respectively, to be 
    compared with <code>b</code>.

a list object with elements <squote>U</squote> and <squote>L</squote>
    (e.g. as obtained from function <code>nma</code>) containing the
    eigenvectors and eigenvalues, respectively, to be 
    compared with <code>a</code>.

subset

arguments passed to associated functions.

Calculate the ovariance overlap obtained from NMA.

utilities

Utilities to process, organize and explore protein structure, sequence and dynamics data.  Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data.  In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.  Please refer to the URLs below for more information.

covsoverlap: Covariance Overlap

Description

Usage

Arguments

Value

Details

References

See Also