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bio3d (version 2.1-2)

nma: Normal Mode Analysis

Description

Performs normal mode analysis (NMA) on either a single or an ensemble of protein structures

Usage

nma(...)

Arguments

...
arguments passed to the methods nma.pdb, or nma.pdbs. This will minimally include an object of class pdb as obtained from function read.pdb. Alternatively, an object of class pdbs

Details

nma is a generic function calling the corresponding function determined by the class of the input argument x. Use methods("nma") to get all the methods for nma generic:

nma.pdb will be used when x is of class pdb as obtained from function read.pdb.

nma.pdbs will perform ensemble normal mode analysis of the PDB structures stored in the pdbs object. See documentation and examples for each corresponding function for more details.

References

Grant, B.J. et al. (2006) Bioinformatics 22, 2695--2696.

See Also

nma.pdb, nma.pdbs, pca.