cov.nma

cov.enma

 an <code>nma</code> object as obtained from function
    <code>nma.pdb</code>. 

 an <code>enma</code> object as obtained from function
    <code>nma.pdbs</code>. 

enma

 number of CPU cores used to do the calculation.
    <code>ncore>1</code> requires package &#145;parallel&#146; installed. 

ncore 


  Calculate the covariance matrix from a normal mode object.


 utilities

Utilities to process, organize and explore protein structure, sequence and dynamics data.  Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data.  In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.  Please refer to the URLs below for more information.

cov.nma: Calculate Covariance Matrix from Normal Modes

Description

Usage

Arguments

Value

Details

References

See Also