Plot an atomic movement similarity matrix with domain annotation
# S3 method for geostas
plot(x, at=seq(0, 1, 0.1), main="AMSM with Domain Assignment",
col.regions=rev(heat.colors(200)),
margin.segments=x$grps, ...)an object of type geostas as obtained by the
‘geostas’ function.
numeric vector specifying the levels to be colored.
a main title for the plot.
color vector. See contourplot for more
information.
a numeric vector of cluster membership as obtained from cutree() or other community detection method. This will be used for bottom and left margin annotation.
additional graphical parameters for
plot.dccm and contourplot.
Called for its effect.
This is a wrapper function for plot.dccm with appropriate
adjustments for plotting atomic movement similarity matrix obtained
from function geostas.
See the plot.dccm for more details.
Grant, B.J. et al. (2006) Bioinformatics 22, 2695--2696.