setup.ncore

Internally used in parallelized Bio3D functions.

 utilities

Utilities to process, organize and explore protein structure,
sequence and dynamics data. Features include the ability to read and write
structure, sequence and dynamic trajectory data, perform sequence and structure
database searches, data summaries, atom selection, alignment, superposition,
rigid core identification, clustering, torsion analysis, distance matrix
analysis, structure and sequence conservation analysis, normal mode analysis,
principal component analysis of heterogeneous structure data, and correlation
network analysis from normal mode and molecular dynamics data. In addition,
various utility functions are provided to enable the statistical and graphical
power of the R environment to work with biological sequence and structural data.
Please refer to the URLs below for more information.

Barry Grant

bio3d

Biological Structure Analysis

Xin-Qiu Yao

Lars Skjaerven

Julien Ide

setup.ncore function

<dl> <dt>ncore</dt>
<dd>User set (or default) value of &#8216;ncore&#8217;.</dd> <dt>bigmem</dt>
<dd>logical, if TRUE also check the availability of &#8216;bigmemory&#8217; package.</dd></dl>

Arguments

Setup for Running Bio3D Functions using Multiple CPU Cores — setup.ncore

<dl>

 <dt>ncore</dt>
<dd>User set (or default) value of &#8216;ncore&#8217;.</dd>

 <dt>bigmem</dt>
<dd>logical, if TRUE also check the availability of &#8216;bigmemory&#8217; package.</dd>

</dl>

setup.ncore: Setup for Running Bio3D Functions using Multiple CPU Cores

Description

Usage

Value

Arguments

Details

Examples