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biofiles (version 1.0.0)

biofiles: biofiles is an R package for interfacing with GenBank or Embl flat file records.

Description

This is an R package for interfacing with GenBank, GenPept, Embl and IMGT/HLA flat file records. It includes utilities for reading and writing GenBank files, and methods for interacting with annotation and sequence data.

Arguments

References

For a sample GenBank record see https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

For a detailed description of the GenBank feature table format see https://www.ncbi.nlm.nih.gov/collab/FT

For a description of the EMBL flat file format see ftp://ftp.ebi.ac.uk/pub/databases/embl/doc/usrman.txt.

For a description of the format and conventions of IMGT/HLA flat files see https://www.ebi.ac.uk/ipd/imgt/hla/docs/manual.html.