gbFeatureTable-class

&#8220;gbFeatureTable&#8221; is an S4 class that provides a container for
&#8220;<a href="/link/?package=biofiles&version=1.0.0" gbfeature'="" data-mini-rdoc="biofiles::"></a>'>gbFeature&#8221;s retrived from GenBank flat files.

Parse GenBank/GenPept records <https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html>
into native R objects to easily access and manipulate the sequence and annotation information.

Gerhard Schöfl

biofiles

An Interface for GenBank/GenPept Flat Files

gbFeatureTable-class function

<dl class="dl-horizontal">
<dt><code>.seqinfo</code></dt><dd>A <code><a href="/link/?package=biofiles&version=1.0.0" seqinfo'="" data-mini-rdoc="biofiles::"></a>'>seqinfo</code> object containing the
genome sequence as an <code><a href="/link/?package=biofiles&version=1.0.0" xstringset'="" data-mini-rdoc="biofiles::"></a>'>XStringSet</code> object and
sequence metadata as a <code><a href="/link/?package=biofiles&version=1.0.0" gbheader'="" data-mini-rdoc="biofiles::"></a>'>gbHeader</code> object.</dd></dl><dt><code>.id</code></dt><dd>An integer vector the indices of the <code><a href="/link/?package=biofiles&version=1.0.0" gbfeature'="" data-mini-rdoc="biofiles::"></a>'>gbFeature</code>s
contained within a <code>gbFeatureTable</code> object.</dd><dt><code>.Data</code></dt><dd>A list of <code><a href="/link/?package=biofiles&version=1.0.0" gbfeature'="" data-mini-rdoc="biofiles::"></a>'>gbFeature</code> objects.</dd>

Slots

&#8220;gbFeatureTable&#8221; is an S4 class that provides a container for
&#8220;<a href='<a href='gbFeature'></a>'>gbFeature</a>&#8221;s retrived from GenBank flat files.

gbFeatureTable-class: Class `"gbFeatureTable"`

Description

Arguments

Slots