biofiles (version 1.0.0)

getLocus: Access the various fields of a GenBank record.

Description

Access the various fields of a GenBank record.

Usage

getLocus(x, ...)
getLength(x, ...)
getMoltype(x, ...)
getTopology(x, ...)
getDivision(x, ...)
getDate(x)
getDefinition(x, ...)
getAccession(x, ...)
getVersion(x, ...)
getGeneID(x, ...)
getDBLink(x)
getDBSource(x)
getSource(x)
getOrganism(x)
getTaxonomy(x)
getKeywords(x)
getReference(x)
getComment(x)
# S4 method for seqinfo
getLocus(x)
# S4 method for seqinfo
getLength(x)
# S4 method for seqinfo
getMoltype(x)
# S4 method for seqinfo
getTopology(x)
# S4 method for seqinfo
getDivision(x)
# S4 method for seqinfo
getDate(x)
# S4 method for seqinfo
getDefinition(x)
# S4 method for seqinfo
getAccession(x)
# S4 method for seqinfo
getVersion(x)
# S4 method for seqinfo
getGeneID(x, db = "gi")
# S4 method for seqinfo
getDBLink(x)
# S4 method for seqinfo
getDBSource(x)
# S4 method for seqinfo
getSource(x)
# S4 method for seqinfo
getOrganism(x)
# S4 method for seqinfo
getTaxonomy(x)
# S4 method for seqinfo
getReference(x)
# S4 method for seqinfo
getKeywords(x)
# S4 method for seqinfo
getComment(x)
# S4 method for gbLocation
getAccession(x)
# S4 method for gbFeature
getLocus(x)
# S4 method for gbFeature
getLength(x)
# S4 method for gbFeature
getMoltype(x)
# S4 method for gbFeature
getTopology(x)
# S4 method for gbFeature
getDivision(x)
# S4 method for gbFeature
getDate(x)
# S4 method for gbFeature
getDefinition(x)
# S4 method for gbFeature
getAccession(x)
# S4 method for gbFeature
getVersion(x)
# S4 method for gbFeature
getGeneID(x, db = "gi")
# S4 method for gbFeature
getDBLink(x)
# S4 method for gbFeature
getDBSource(x)
# S4 method for gbFeature
getSource(x)
# S4 method for gbFeature
getOrganism(x)
# S4 method for gbFeature
getTaxonomy(x)
# S4 method for gbFeature
getReference(x)
# S4 method for gbFeature
getKeywords(x)
# S4 method for gbFeature
getComment(x)
# S4 method for gbFeatureTable
getLocus(x)
# S4 method for gbFeatureTable
getLength(x)
# S4 method for gbFeatureTable
getMoltype(x)
# S4 method for gbFeatureTable
getTopology(x)
# S4 method for gbFeatureTable
getDivision(x)
# S4 method for gbFeatureTable
getDate(x)
# S4 method for gbFeatureTable
getDefinition(x)
# S4 method for gbFeatureTable
getAccession(x)
# S4 method for gbFeatureTable
getVersion(x)
# S4 method for gbFeatureTable
getGeneID(x, db = "gi")
# S4 method for gbFeatureTable
getDBLink(x)
# S4 method for gbFeatureTable
getDBSource(x)
# S4 method for gbFeatureTable
getSource(x)
# S4 method for gbFeatureTable
getOrganism(x)
# S4 method for gbFeatureTable
getTaxonomy(x)
# S4 method for gbFeatureTable
getReference(x)
# S4 method for gbFeatureTable
getKeywords(x)
# S4 method for gbFeatureTable
getComment(x)
# S4 method for gbRecord
getLocus(x)
# S4 method for gbRecord
getLength(x)
# S4 method for gbRecord
getMoltype(x)
# S4 method for gbRecord
getTopology(x)
# S4 method for gbRecord
getDivision(x)
# S4 method for gbRecord
getDate(x)
# S4 method for gbRecord
getDefinition(x)
# S4 method for gbRecord
getAccession(x)
# S4 method for gbRecord
getVersion(x)
# S4 method for gbRecord
getGeneID(x, db = "gi")
# S4 method for gbRecord
getDBLink(x)
# S4 method for gbRecord
getDBSource(x)
# S4 method for gbRecord
getSource(x)
# S4 method for gbRecord
getOrganism(x)
# S4 method for gbRecord
getTaxonomy(x)
# S4 method for gbRecord
getReference(x)
# S4 method for gbRecord
getKeywords(x)
# S4 method for gbRecord
getComment(x)
# S4 method for gbRecordList
getLocus(x)
# S4 method for gbRecordList
getLength(x)
# S4 method for gbRecordList
getMoltype(x)
# S4 method for gbRecordList
getTopology(x)
# S4 method for gbRecordList
getDivision(x)
# S4 method for gbRecordList
getDate(x)
# S4 method for gbRecordList
getDefinition(x)
# S4 method for gbRecordList
getAccession(x)
# S4 method for gbRecordList
getVersion(x)
# S4 method for gbRecordList
getGeneID(x, db = "gi")
# S4 method for gbRecordList
getDBLink(x)
# S4 method for gbRecordList
getDBSource(x)
# S4 method for gbRecordList
getSource(x)
# S4 method for gbRecordList
getOrganism(x)
# S4 method for gbRecordList
getTaxonomy(x)
# S4 method for gbRecordList
getReference(x)
# S4 method for gbRecordList
getKeywords(x)
# S4 method for gbRecordList
getComment(x)

Arguments

x

A '>gbFeature, '>gbFeatureTable, '>gbRecord, or '>gbRecordList object.

...

Further arguments passed to methods.

db

Which database identifier (default: 'gi')

Examples

# NOT RUN {
load(system.file("extdata", "marine_metagenome.rda", package = "biofiles"))

getLocus(x)
getLength(x)
getGeneID(x)
getReference(x)
getDate(x)
# }