feature_test

A result of <code><a rd-options="" href="/link/test_features?package=biogram&version=1.6.3" data-mini-rdoc="biogram::test_features">test_features</a></code> function.

Tools for extraction and analysis of various
n-grams (k-mers) derived from biological sequences (proteins
or nucleic acids). Contains QuiPT (quick permutation test) for fast
feature-filtering of the n-gram data.

Michal Burdukiewicz

biogram

N-Gram Analysis of Biological Sequences

Piotr Sobczyk

Chris Lauber

Dominik Rafacz

Katarzyna Sidorczuk

feature_test function

<dl class="dl-horizontal">
 <dt>criterion</dt><dd>the criterion used in permutation test.</dd>
 <dt>adjust</dt><dd>the name of p-value adjusting method.</dd>
 <dt>times</dt><dd>the number of permutations. If QuiPT was chosen <code>NA</code>.</dd>
 <dt>occ</dt><dd>frequency of features splitted in subset based on the value of target.</dd>
</dl>

Attributes

A result of <code><a rd-options='' href='test_features'>test_features</a></code> function.

feature_test: feature_test class

Description

Arguments

Attributes

Details

See Also