regional_param

List of rules defining the region.

Tools for extraction and analysis of various
n-grams (k-mers) derived from biological sequences (proteins
or nucleic acids). Contains QuiPT (quick permutation test) for fast
feature-filtering of the n-gram data.

Michal Burdukiewicz

biogram

N-Gram Analysis of Biological Sequences

Piotr Sobczyk

Chris Lauber

Dominik Rafacz

Katarzyna Sidorczuk

regional_param function

<dl class="dl-horizontal">
 <dt>reg_len</dt><dd>the number of unigrams inside the region. Might be 0</dd>
 <dt>prop_ranges</dt><dd>required intervals of properties of unigrams in the region</dd>
 <dt>exactness</dt><dd>a <code>numeric</code> value between 0 and 1 defining how stricly 
unigrams are kept within <code>prop_ranges</code>. If 1, only unigrams within 
<code>prop_ranges</code> are inside the region. if 0.9, there is 10
unigrams that are not in the <code>prop_ranges</code> will be inside the region.</dd>
</dl>

Attributes

regional_param class — regional_param

regional_param class

regional_param: regional_param class

Description

Arguments

Attributes

Details

See Also